PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G149500.1
Common NameB456_004G149500, LOC105791517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 477aa    MW: 53050.6 Da    PI: 6.6137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G149500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12296341454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Gorai.004G149500.1 296 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 341
                         699***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-5226194IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.79E-17290354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.475292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-13295346No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16296356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSHE TPPSTLQQRL QHVLESQKDW WAYAIFWQTS NDDLGRLLLA  60
WGDGHFQGTN ESSKPGANHF QGERRKVMKG IQALIGDNHD IDMGEAEWFY MISLTRCFSA  120
GDGIPGKCLT TGSLVWLTGA HELQFYNCER AKEAQLHGIE TLVCIPTSCG VLELGSSEII  180
RENWGLVQQV KYLFGSDLIR LLPKQSSPNQ FLDRNISFSD MGVIAGVQEQ EHASLGFKTK  240
KDCPKHGELS FVNSDHSDSE CRFRAATESN SNSNTEKRIP KKRGRKPGSG RETLLNHVEA  300
ERQRREKLNH RFYALRAVVP NVSRMDKASL LSDAVAYINE LKSKIEDLQS ELGRDRKKVK  360
IETVDGMDNQ STTTSVEQAA KPSSNSSSGN AGSNGFELDI KIIGNDAMIR VQSENVNHPA  420
ARLMDALRNL EFRVHHASMS CVNDLMIQDV VVSFTENGFG LHEQGLKSAI LTRLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-35251948192Transcription factor MYC3
4rqw_B3e-35251948192Transcription factor MYC3
4rs9_A3e-35251948192Transcription factor MYC3
4yz6_A3e-35251948192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475055.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0D2R5410.0A0A0D2R541_G
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-89bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]